Struct PadmetSpec 

pub struct PadmetSpec {
    pub dic_of_relations_in: HashMap<String, Vec<Relation>>,
    pub dic_of_relations_out: HashMap<String, Vec<Relation>>,
    pub dic_of_nodes: HashMap<String, Node>,
    pub policy: Policy,
    pub info: HashMap<String, HashMap<String, String>>,
}

Fields

dic_of_relations_in: HashMap<String, Vec<Relation>>

dic_of_relations_out: HashMap<String, Vec<Relation>>

dic_of_nodes: HashMap<String, Node>

policy: Policy

info: HashMap<String, HashMap<String, String>>

Implementations

impl PadmetSpec

pub fn new( dic_of_relations_in: HashMap<String, Vec<Relation>>, dic_of_relations_out: HashMap<String, Vec<Relation>>, dic_of_nodes: HashMap<String, Node>, policy: Policy, info: HashMap<String, HashMap<String, String>>, ) -> Self

pub fn from_file<P>(filename: P) -> Result<PadmetSpec>

where P: AsRef<Path>,

pub fn get_all_relations(&self) -> Vec<Relation>

Get a set of all relations in the padmet object

pub fn get_relations_type_id_in( &self, relation_type: &String, relation_id_in: &String, ) -> Vec<Relation>

Get the list of relations of a certain type, coming from a certain node

pub fn get_relations_type_id_out( &self, relation_type: &String, relation_id_out: &String, ) -> Vec<Relation>

Get the list of relations of a certain type, leading to a certain node

pub fn get_relations( self, relation_id_in: &String, relation_type: &String, relation_id_out: &String, ) -> Vec<Relation>

Get relation from relation_id_in to relation_id_out nodes and with a specific relation_type

pub fn get_nodes_of_type(&self, node_type: &str) -> Vec<Node>

pub fn get_compounds(&self) -> Vec<Node>

Get all the compounds from a padmet instance.

pub fn get_reactions(&self) -> Vec<Node>

Get all the reactions from a padmet instance

pub fn get_genes(&self) -> Vec<Node>

Get all the reactions from a padmet instance

pub fn get_pathways(&self) -> Vec<Node>

Get all the pathways from a padmet instance

pub fn get_pathways_reactions(&self) -> HashMap<String, HashSet<String>>

Get all the pathways from a padmet instance with their set of reactions.

Trait Implementations

impl Clone for PadmetSpec

fn clone(&self) -> PadmetSpec

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for PadmetSpec

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.